PPanGGOLiN

User Guide:

  • Installation
  • Quick usage
  • Practical information
  • Pangenome analyses
  • Regions of genome plasticity analyses
  • Conserved module prediction
  • Write genomes
  • Write pangenome sequences
  • Align external genes to a pangenome
  • Projection
  • Prediction of Genomic Context
  • Multiple Sequence Alignment
  • Metadata and Pangenome

Developper Guide:

  • How to Contribute ✨
  • Building the Documentation
  • API Reference
    • ppanggolin package
    • Indices and tables
PPanGGOLiN
  • API Reference
  • View page source

API Reference

  • ppanggolin package
    • Subpackages
    • Submodules
    • ppanggolin.edge module
    • ppanggolin.geneFamily module
    • ppanggolin.genetic_codes module
    • ppanggolin.genome module
    • ppanggolin.main module
    • ppanggolin.metadata module
    • ppanggolin.pangenome module
    • ppanggolin.region module
    • ppanggolin.utils module
    • Module contents
  • Indices and tables
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