# Pangenome analyses

## Workflow
```{include} ./pangenomeWorkflow.md
```

## Annotation

```{include} ./pangenomeAnnotation.md
```

(clustering)=
## Compute pangenome gene families
```{include} ./pangenomeCluster.md
```

## Graph
```{include} ./pangenomeGraph.md
```

## Partition
```{include} ./pangenomePartition.md
```

(pan-output)=
## Pangenome outputs
```{include} ./pangenomeStat.md
```

```{include} ./pangenomeGraphOut.md
```

```{include} ./pangenomeFigures.md
```

## Pangenome metrics
```{include} ./pangenomeMetric.md
```

## Pangenome info

```{include} ./pangenomeInfo.md
```