name: ppanggolin
channels:
  - bioconda
  - conda-forge
dependencies:
  - pip
  - tqdm>=4.0.0,<5.0.0
  - pytables>=3.8.0,<4.0.0
  - pyrodigal>=3.0.0,<4.0.0
  - networkx>=3.0.0,<4.0.0
  - scipy>=1.0.0,<2.0.0
  - plotly>=5.0.0,<6.0.0
  - gmpy2>=2.0.0,<3.0.0
  - pandas>=2.0.0,<3.0.0
  - numpy>1.24.0,<2.0.0
  - bokeh>=3.0.0,<4.0.0
  # Tools that are not in Python 
  - infernal=1
  - aragorn=1
  - mmseqs2=15
  - mafft=7
